As mentioned in the following article, HALAL bento has been available at JR Tokyo station since April 2016.
http://halalmedia.jp/archives/12317/bento-shop-in-tokyo-station-zenmai-started-to-sell-halal-bento/
HALAL Baumkuchen is now available at the convenience store “NewDays” inside JR East stations, making HALAL food much easier to purchase.